Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs118041849 chr6:148679894 C/T 5.5E-6 285 26.4 19.63 17.13 KM Plot
KIRP rs11805033 chr1:231546452 T/C 0.000196 284 25.23 30.23 19.9 KM Plot
KIRP rs11807046 chr1:58991442 T/C 2.29E-5 289 25.6 27.43 13.17 KM Plot
KIRP rs118146173 chr17:80729377 C/T 6.44E-9 283 26.07 28.35 16.4 KM Plot
KIRP rs11847202 chr14:58067405 A/G 3.17E-5 278 17.08 28.17 23.23 KM Plot
KIRP rs11861070 chr16:88062403 A/G 1.92E-11 283 25.63 26.37 9 KM Plot
KIRP rs11871678 chr17:79654285 G/A 1.68E-6 282 25.57 28.73 8.4 KM Plot
KIRP rs11913280 chr22:44554088 A/T 0.000161 289 26 20.8 12.1 KM Plot
KIRP rs11923306 chr3:197177870 C/T 7.84E-6 289 24.8 28.1 18.45 KM Plot
KIRP rs11968727 chr6:71830538 T/C 0.000115 281 25.6 28.1 10.83 KM Plot
KIRP rs1197706 chr15:42085407 T/C 0.000199 280 16.57 21.9 28.05 KM Plot
KIRP rs12029714 chr1:89511556 A/G 7.57E-5 284 18.9 34.48 26.57 KM Plot
KIRP rs1203106 chr4:3461071 T/C 0.000114 280 26.15 25.23 20.8 KM Plot
KIRP rs1203107 chr4:3459849 C/T 0.000125 279 25.93 26.2 20.8 KM Plot
KIRP rs12033229 chr1:231545703 T/C 0.000196 284 25.23 30.23 19.9 KM Plot